Lactiplantibacillus pentosus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactiplantibacillus; s__Lactiplantibacillus pentosus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus pentosus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus pentosus; x__Lactobacillus pentosus DSM 20314
NCBI Strain Identifiers DSM 20314
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_003641185.1)
Genome Characteristics
CheckM Completeness 97.22%
CheckM Contamination 2.16%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 152
N50 Contigs 48,077 bp
Longest Contig 175,111 bp
Scaffold Count 60
N50 Scaffolds 162,763 bp
Longest Scaffold 291,906 bp
Genome Size 3,647,705 bp
Protein Count 3,294
Coding Density 79.50%
GC Percentage 46.31%
Ambiguous Bases N/A
GTDB representative GCA_003641185.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM143375v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02369484
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001433755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Corn silage
Latitude Longitude None
Molecule Count N/A
CDS Count 3,354
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 92
Species Taxid 1589
SSU Count 1
Submitter Shanghai Majorbio
Taxid 1423791
Total Gap Length 18085
Translation Table 11
tRNA Count (total) 66
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AZCU00000000.1