Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers FORC_004;aquarium water
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 13
16S Count 13
23S Count 13
tRNA Count 20
Contig Count 3
N50 Contigs 3,348,850 bp
Longest Contig 3,348,850 bp
Scaffold Count 3
N50 Scaffolds 3,348,850 bp
Longest Scaffold 3,348,850 bp
Genome Size 5,171,661 bp
Protein Count 4,615
Coding Density 85.91%
GC Percentage 45.48%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM143341v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03140317
Country South Korea: Busan
Date 2015-11-5
Genbank Assembly Accession GCA_001433415.1
Genome Category Isolate
Genome Representation full
Isolate aquarium water
Isolation Source aquarium water
Latitude Longitude 35.10 N 129.4 E
Molecule Count 3
CDS Count 4,817
Refseq Category na
Seq Rel Date 2015/11/05
Spanned Gaps 0
Species Taxid 670
SSU Count 12
Submitter Food-borne Pathogen Omics Research Center, FORC
Taxid 670
Total Gap Length 0
Translation Table 11
tRNA Count (total) 132
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None