Stenotrophomonas geniculata
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Stenotrophomonas; s__Stenotrophomonas geniculata
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__; s__[Pseudomonas] geniculata
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; x__unclassified Xanthomonadaceae; s__[Pseudomonas] geniculata; x__[Pseudomonas] geniculata ATCC 19374 = JCM 13324
NCBI Strain Identifiers JCM 13324
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (29 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.76%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 170
N50 Contigs 55,144 bp
Longest Contig 188,579 bp
Scaffold Count 170
N50 Scaffolds 55,144 bp
Longest Scaffold 188,579 bp
Genome Size 4,809,792 bp
Protein Count 4,488
Coding Density 89.45%
GC Percentage 66.18%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143162v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04207799
Country USA
Date 2015-11-4
Genbank Assembly Accession GCA_001431625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source tap water
Latitude Longitude None
Molecule Count N/A
CDS Count 4,485
Refseq Category na
Seq Rel Date 2015/11/04
Spanned Gaps 0
Species Taxid 86188
SSU Count 2
Submitter CSIR-Institute of Microbial Technology
Taxid 1336242
Total Gap Length 0
Translation Table 11
tRNA Count (total) 66
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LLXT00000000.1