Stenotrophomonas koreensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Stenotrophomonas; s__Stenotrophomonas koreensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Stenotrophomonas; s__Stenotrophomonas koreensis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Stenotrophomonas; s__Stenotrophomonas koreensis
NCBI Strain Identifiers DSM 17805
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.16%
CheckM Contamination 0.79%
CheckM Strain Heterogeneity 50.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 58
N50 Contigs 188,329 bp
Longest Contig 497,147 bp
Scaffold Count 58
N50 Scaffolds 188,329 bp
Longest Scaffold 497,147 bp
Genome Size 3,029,904 bp
Protein Count 2,788
Coding Density 89.91%
GC Percentage 66.11%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143152v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03701670
Country South Korea
Date 2015-11-4
Genbank Assembly Accession GCA_001431525.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source compost
Latitude Longitude None
Molecule Count N/A
CDS Count 2,759
Refseq Category representative genome
Seq Rel Date 2015/11/04
Spanned Gaps 0
Species Taxid 266128
SSU Count 1
Submitter CSIR-Institute of Microbial Technology
Taxid 266128
Total Gap Length 0
Translation Table 11
tRNA Count (total) 75
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LDJH00000000.1