Stenotrophomonas nitritireducens
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Stenotrophomonas; s__Stenotrophomonas nitritireducens
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Stenotrophomonas; s__Stenotrophomonas nitritireducens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Stenotrophomonas; s__Stenotrophomonas nitritireducens
NCBI Strain Identifiers DSM 12575
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 95.5%
CheckM Contamination 0.78%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 95
N50 Contigs 167,790 bp
Longest Contig 322,412 bp
Scaffold Count 95
N50 Scaffolds 167,790 bp
Longest Scaffold 322,412 bp
Genome Size 3,983,487 bp
Protein Count 3,516
Coding Density 88.69%
GC Percentage 68.34%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143142v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03701629
Country Germany
Date 2015-11-4
Genbank Assembly Accession GCA_001431425.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Laboratory scale biofilters supplied with ammonia or dimethyl disulfide and ammonia
Latitude Longitude None
Molecule Count N/A
CDS Count 3,515
Refseq Category na
Seq Rel Date 2015/11/04
Spanned Gaps 0
Species Taxid 83617
SSU Count 1
Submitter CSIR-Institute of Microbial Technology
Taxid 83617
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LDJG00000000.1