Stenotrophomonas humi
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Stenotrophomonas; s__Stenotrophomonas humi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Stenotrophomonas; s__Stenotrophomonas humi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Stenotrophomonas; s__Stenotrophomonas humi
NCBI Strain Identifiers DSM 18929
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 1.03%
CheckM Strain Heterogeneity 25.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 92
N50 Contigs 171,493 bp
Longest Contig 275,573 bp
Scaffold Count 92
N50 Scaffolds 171,493 bp
Longest Scaffold 275,573 bp
Genome Size 4,122,049 bp
Protein Count 3,682
Coding Density 88.69%
GC Percentage 64.05%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143141v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03701675
Country Belgium
Date 2015-11-4
Genbank Assembly Accession GCA_001431415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count N/A
CDS Count 3,649
Refseq Category na
Seq Rel Date 2015/11/04
Spanned Gaps 0
Species Taxid 405444
SSU Count 1
Submitter CSIR-Institute of Microbial Technology
Taxid 405444
Total Gap Length 0
Translation Table 11
tRNA Count (total) 62
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LDJI00000000.1