Undefined name (Failed Quality Check)
Isolate LQ 5S/16S/23S 7 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__; g__Candidatus Symbiothrix; s__Candidatus Symbiothrix dinenymphae
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; x__unclassified Bacteroidales; g__Candidatus Symbiothrix; s__Candidatus Symbiothrix dinenymphae
NCBI Strain Identifiers C5-4h
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 26.06%
CheckM Contamination 1.11%
CheckM Strain Heterogeneity 100.0
5S Count 1
16S Count 3
23S Count 2
tRNA Count 7
Contig Count 599
N50 Contigs 8,649 bp
Longest Contig 36,477 bp
Scaffold Count 599
N50 Scaffolds 8,649 bp
Longest Scaffold 36,477 bp
Genome Size 1,173,072 bp
Protein Count 1,462
Coding Density 90.66%
GC Percentage 45.96%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143108v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00024443
Country None
Date 2015-8-25
Genbank Assembly Accession GCA_001431085.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,341
Refseq Category na
Seq Rel Date 2015/08/25
Spanned Gaps 0
Species Taxid 467085
SSU Count 3
Submitter Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center
Taxid 467085
Total Gap Length 0
Translation Table 11
tRNA Count (total) 9
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBRU00000000.1