Liberibacter asiaticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Liberibacter; s__Liberibacter asiaticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Liberibacter; s__Candidatus Liberibacter asiaticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Liberibacter; s__Candidatus Liberibacter asiaticus
NCBI Strain Identifiers SGCA5
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002216815.1)
Genome Characteristics
CheckM Completeness 96.85%
CheckM Contamination 0.45%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 56
N50 Contigs 41,214 bp
Longest Contig 155,151 bp
Scaffold Count 56
N50 Scaffolds 41,214 bp
Longest Scaffold 155,151 bp
Genome Size 1,201,385 bp
Protein Count 1,106
Coding Density 79.49%
GC Percentage 36.36%
Ambiguous Bases N/A
GTDB representative GCA_002216815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM143070v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04209216
Country USA: California; San Gabriel
Date 2015-11-3
Genbank Assembly Accession GCA_001430705.1
Genome Category Isolate
Genome Representation full
Isolate SGCA5
Isolation Source total plant DNA from petiole and leafmidrib tissue of orange citrus CLas-infected tree NO.5
Latitude Longitude None
Molecule Count N/A
CDS Count 1,079
Refseq Category na
Seq Rel Date 2015/11/03
Spanned Gaps 0
Species Taxid 34021
SSU Count 1
Submitter USDA-ARS
Taxid 34021
Total Gap Length 0
Translation Table 11
tRNA Count (total) 39
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMTO00000000.1