Pedococcus sp001429605
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Dermatophilaceae; g__Pedococcus; s__Pedococcus sp001429605
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Intrasporangiaceae; g__Phycicoccus; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Intrasporangiaceae; g__Phycicoccus; s__Phycicoccus sp. Soil803
NCBI Strain Identifiers Soil803
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001429605.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 32
N50 Contigs 677,893 bp
Longest Contig 914,981 bp
Scaffold Count 6
N50 Scaffolds 4,403,221 bp
Longest Scaffold 4,403,221 bp
Genome Size 4,469,718 bp
Protein Count 4,126
Coding Density 90.72%
GC Percentage 70.53%
Ambiguous Bases 102
GTDB representative GCA_001429605.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Soil803
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155680
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001429685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 4,090
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 26
Species Taxid 1736415
SSU Count 1
Submitter ETH Zurich
Taxid 1736415
Total Gap Length 2558
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMST00000000.1