Pectobacterium brasiliense
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pectobacterium; s__Pectobacterium brasiliense
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Pectobacterium; s__Pectobacterium carotovorum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Pectobacterium; s__Pectobacterium carotovorum; sb__Pectobacterium carotovorum subsp. brasiliense
NCBI Strain Identifiers PcbHPI01
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000294535.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.34%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 70
N50 Contigs 404,385 bp
Longest Contig 1,232,376 bp
Scaffold Count 70
N50 Scaffolds 404,385 bp
Longest Scaffold 1,232,376 bp
Genome Size 4,815,892 bp
Protein Count 4,296
Coding Density 87.32%
GC Percentage 52.15%
Ambiguous Bases N/A
GTDB representative GCA_000294535.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM142956v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04127569
Country South Africa: Tshwane Vegetable Market
Date 2015-11-2
Genbank Assembly Accession GCA_001429565.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cucumber
Latitude Longitude 25.848677912368323 S 28.14550817012787 E
Molecule Count N/A
CDS Count 4,324
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 0
Species Taxid 554
SSU Count 3
Submitter University of Pretoria
Taxid 180957
Total Gap Length 0
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKKQ00000000.1