Nocardioides sp001426745
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Propionibacteriales; f__Nocardioidaceae; g__Nocardioides; s__Nocardioides sp001426745
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Propionibacteriales; f__Nocardioidaceae; g__Nocardioides; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Propionibacteriales; f__Nocardioidaceae; g__Nocardioides; s__Nocardioides sp. Soil796
NCBI Strain Identifiers Soil796
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001426745.1)
Genome Characteristics
CheckM Completeness 99.05%
CheckM Contamination 1.21%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 70
N50 Contigs 230,353 bp
Longest Contig 549,046 bp
Scaffold Count 22
N50 Scaffolds 840,812 bp
Longest Scaffold 1,236,483 bp
Genome Size 5,288,659 bp
Protein Count 5,093
Coding Density 91.97%
GC Percentage 69.47%
Ambiguous Bases 152
GTDB representative GCA_001426745.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Soil796
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155677
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001429525.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 5,027
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 48
Species Taxid 1736412
SSU Count 2
Submitter ETH Zurich
Taxid 1736412
Total Gap Length 3432
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMSQ00000000.1