Acidovorax_D radicis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Acidovorax_D; s__Acidovorax_D radicis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Acidovorax; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Acidovorax; s__Acidovorax sp. Root267
NCBI Strain Identifiers Root267
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000204195.2)
Genome Characteristics
CheckM Completeness 99.75%
CheckM Contamination 1.14%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 38
N50 Contigs 382,325 bp
Longest Contig 978,820 bp
Scaffold Count 34
N50 Scaffolds 518,398 bp
Longest Scaffold 978,820 bp
Genome Size 5,676,132 bp
Protein Count 5,170
Coding Density 88.93%
GC Percentage 64.73%
Ambiguous Bases 47
GTDB representative GCA_000204195.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root267
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155774
Country Germany:Golm
Date 2015-11-2
Genbank Assembly Accession GCA_001429215.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 52.416 N 12.968 E
Molecule Count N/A
CDS Count 5,129
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 4
Species Taxid 1736505
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736505
Total Gap Length 142
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMJC00000000.1