Acidovorax_D sp001428665
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Acidovorax_D; s__Acidovorax_D sp001428665
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Acidovorax; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Acidovorax; s__Acidovorax sp. Root217
NCBI Strain Identifiers Root217
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001428665.1)
Genome Characteristics
CheckM Completeness 99.43%
CheckM Contamination 0.4%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 299
N50 Contigs 66,387 bp
Longest Contig 197,166 bp
Scaffold Count 45
N50 Scaffolds 337,792 bp
Longest Scaffold 1,029,633 bp
Genome Size 6,756,331 bp
Protein Count 6,217
Coding Density 89.54%
GC Percentage 66.92%
Ambiguous Bases 16
GTDB representative GCA_001428665.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root217
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155761
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001428645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 6,167
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 254
Species Taxid 1736492
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736492
Total Gap Length 16528
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMIH00000000.1