Pseudoduganella sp001425005
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pseudoduganella; s__Pseudoduganella sp001425005
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Duganella; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Duganella; s__Duganella sp. Root198D2
NCBI Strain Identifiers Root198D2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001425005.1)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 0.84%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 58
N50 Contigs 318,817 bp
Longest Contig 614,132 bp
Scaffold Count 51
N50 Scaffolds 318,817 bp
Longest Scaffold 617,758 bp
Genome Size 6,542,676 bp
Protein Count 5,883
Coding Density 92.49%
GC Percentage 62.33%
Ambiguous Bases 177
GTDB representative GCA_001425005.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root198D2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155758
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001428585.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 5,900
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 7
Species Taxid 1736489
SSU Count 2
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736489
Total Gap Length 392
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMIC00000000.1