Mycobacterium sp001428285
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium sp001428285
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium sp. Soil538
NCBI Strain Identifiers Soil538
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.18%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 99
N50 Contigs 226,973 bp
Longest Contig 599,649 bp
Scaffold Count 24
N50 Scaffolds 608,236 bp
Longest Scaffold 1,902,647 bp
Genome Size 5,747,657 bp
Protein Count 5,511
Coding Density 93.12%
GC Percentage 68.89%
Ambiguous Bases 101
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Soil538
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155656
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001428285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 5,458
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 75
Species Taxid 1736391
SSU Count 2
Submitter ETH Zurich
Taxid 1736391
Total Gap Length 3540
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMRX00000000.1