Flavobacterium sp001427905
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium sp001427905
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium sp. Root420
NCBI Strain Identifiers Root420
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.65%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 48
N50 Contigs 345,108 bp
Longest Contig 811,907 bp
Scaffold Count 34
N50 Scaffolds 370,611 bp
Longest Scaffold 811,907 bp
Genome Size 5,627,472 bp
Protein Count 4,733
Coding Density 87.82%
GC Percentage 34.13%
Ambiguous Bases 249
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root420
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155802
Country Germany:Golm
Date 2015-11-02
Genbank Assembly Accession GCA_001427905.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 52.416 N 12.968 E
Molecule Count N/A
CDS Count 4,628
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 14
Species Taxid 1736533
SSU Count 3
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736533
Total Gap Length 617
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMEF00000000.1