Pelomonas sp001425165
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pelomonas; s__Pelomonas sp001425165
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Pelomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Pelomonas; s__Pelomonas sp. Root662
NCBI Strain Identifiers Root662
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001425165.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.17%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 20
N50 Contigs 702,098 bp
Longest Contig 1,503,292 bp
Scaffold Count 18
N50 Scaffolds 703,359 bp
Longest Scaffold 1,503,292 bp
Genome Size 5,812,563 bp
Protein Count 5,277
Coding Density 92.48%
GC Percentage 67.79%
Ambiguous Bases 85
GTDB representative GCA_001425165.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root662
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155849
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001427705.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 5,227
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 2
Species Taxid 1736580
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736580
Total Gap Length 260
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMHE00000000.1