Microbacterium sp001427525
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Microbacteriaceae; g__Microbacterium; s__Microbacterium sp001427525
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Microbacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Microbacterium; s__Microbacterium sp. Root61
NCBI Strain Identifiers Root61
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.99%
CheckM Contamination 2.02%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 2
N50 Contigs 3,510,616 bp
Longest Contig 3,510,616 bp
Scaffold Count 2
N50 Scaffolds 3,510,616 bp
Longest Scaffold 3,510,616 bp
Genome Size 4,022,601 bp
Protein Count 3,729
Coding Density 92.87%
GC Percentage 68.68%
Ambiguous Bases 14
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name Root61
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155839
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001427525.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 3,689
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 0
Species Taxid 1736570
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736570
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMGU00000000.1