Acidovorax_D sp002754175
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Acidovorax_D; s__Acidovorax_D sp002754175
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Acidovorax; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Acidovorax; s__Acidovorax sp. Root568
NCBI Strain Identifiers Root568
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002754175.1)
Genome Characteristics
CheckM Completeness 99.56%
CheckM Contamination 0.02%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 26
N50 Contigs 359,011 bp
Longest Contig 755,919 bp
Scaffold Count 20
N50 Scaffolds 613,000 bp
Longest Scaffold 755,919 bp
Genome Size 5,103,772 bp
Protein Count 4,640
Coding Density 89.83%
GC Percentage 64.86%
Ambiguous Bases 38
GTDB representative GCA_002754175.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root568
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155834
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001427445.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 4,621
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 6
Species Taxid 1736565
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736565
Total Gap Length 514
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMGP00000000.1