Pseudoduganella sp001427305
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pseudoduganella; s__Pseudoduganella sp001427305
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Duganella; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Duganella; s__Duganella sp. Root1480D1
NCBI Strain Identifiers Root1480D1
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 1.48%
CheckM Strain Heterogeneity 15.38
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 51
N50 Contigs 354,768 bp
Longest Contig 731,282 bp
Scaffold Count 50
N50 Scaffolds 354,768 bp
Longest Scaffold 731,282 bp
Genome Size 6,603,920 bp
Protein Count 5,996
Coding Density 92.48%
GC Percentage 62.04%
Ambiguous Bases 186
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root1480D1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155740
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001427305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 6,030
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 1
Species Taxid 1736471
SSU Count 2
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736471
Total Gap Length 16
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMFZ00000000.1