Mesorhizobium sp001427285
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Mesorhizobium; s__Mesorhizobium sp001427285
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Phyllobacteriaceae; g__Mesorhizobium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Phyllobacteriaceae; g__Mesorhizobium; s__Mesorhizobium sp. Root552
NCBI Strain Identifiers Root552
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.68%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 74
N50 Contigs 175,154 bp
Longest Contig 486,513 bp
Scaffold Count 63
N50 Scaffolds 201,960 bp
Longest Scaffold 486,513 bp
Genome Size 4,619,371 bp
Protein Count 4,515
Coding Density 88.19%
GC Percentage 60.89%
Ambiguous Bases 198
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root552
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155824
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001427285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 4,445
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 11
Species Taxid 1736555
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736555
Total Gap Length 481
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMFV00000000.1