Streptomyces sp001427245
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces sp001427245
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces sp. Root55
NCBI Strain Identifiers Root55
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.49%
CheckM Contamination 0.53%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 44
N50 Contigs 388,630 bp
Longest Contig 917,440 bp
Scaffold Count 40
N50 Scaffolds 525,755 bp
Longest Scaffold 917,440 bp
Genome Size 8,054,949 bp
Protein Count 7,010
Coding Density 86.10%
GC Percentage 71.05%
Ambiguous Bases 263
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root55
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155823
Country Germany:Cologne
Date 2015-11-02
Genbank Assembly Accession GCA_001427245.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 7,037
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 4
Species Taxid 1736554
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736554
Total Gap Length 137
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMFT00000000.1