Pseudomonas_E sp001427125
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E sp001427125
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. Root562
NCBI Strain Identifiers Root562
GTDB Type Material Designation not type material
GTDB Representative of Species True (5 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 40
N50 Contigs 391,634 bp
Longest Contig 632,854 bp
Scaffold Count 26
N50 Scaffolds 448,775 bp
Longest Scaffold 714,173 bp
Genome Size 6,216,018 bp
Protein Count 5,580
Coding Density 88.36%
GC Percentage 59.00%
Ambiguous Bases 228
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root562
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155830
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001427125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 5,623
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 14
Species Taxid 1736561
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736561
Total Gap Length 502
Translation Table 11
tRNA Count (total) 62
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMGK00000000.1