Pararhizobium sp001426665
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Pararhizobium; s__Pararhizobium sp001426665
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Rhizobium; s__Rhizobium sp. Root1334
NCBI Strain Identifiers Root1334
GTDB Type Material Designation not type material
GTDB Representative of Species True (4 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 1.59%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 33
N50 Contigs 522,839 bp
Longest Contig 1,533,467 bp
Scaffold Count 32
N50 Scaffolds 522,839 bp
Longest Scaffold 1,533,467 bp
Genome Size 6,310,811 bp
Protein Count 5,997
Coding Density 87.71%
GC Percentage 59.39%
Ambiguous Bases 77
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root1334
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155725
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001426665.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 5,969
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 1
Species Taxid 1736456
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736456
Total Gap Length 28
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMEY00000000.1