Variovorax sp000282635
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Variovorax; s__Variovorax sp000282635
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Variovorax; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Variovorax; s__Variovorax sp. Root434
NCBI Strain Identifiers Root434
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000282635.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 34
N50 Contigs 457,706 bp
Longest Contig 1,214,711 bp
Scaffold Count 29
N50 Scaffolds 459,038 bp
Longest Scaffold 1,214,711 bp
Genome Size 6,322,190 bp
Protein Count 5,874
Coding Density 91.55%
GC Percentage 66.92%
Ambiguous Bases 172
GTDB representative GCA_000282635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root434
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155805
Country Germany:Golm
Date 2015-11-2
Genbank Assembly Accession GCA_001426595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 52.416 N 12.968 E
Molecule Count N/A
CDS Count 5,871
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 5
Species Taxid 1736536
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736536
Total Gap Length 345
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMEK00000000.1