Paenibacillus_E sp001426375
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Paenibacillales; f__Paenibacillaceae; g__Paenibacillus_E; s__Paenibacillus_E sp001426375
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Paenibacillaceae; g__Paenibacillus; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Paenibacillaceae; g__Paenibacillus; s__Paenibacillus sp. Root444D2
NCBI Strain Identifiers Root444D2
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.19%
CheckM Contamination 1.57%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 67
N50 Contigs 306,037 bp
Longest Contig 973,286 bp
Scaffold Count 53
N50 Scaffolds 404,582 bp
Longest Scaffold 1,402,157 bp
Genome Size 8,119,172 bp
Protein Count 7,287
Coding Density 86.47%
GC Percentage 44.66%
Ambiguous Bases 176
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root444D2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155807
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001426375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 7,171
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 14
Species Taxid 1736538
SSU Count 6
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736538
Total Gap Length 639
Translation Table 11
tRNA Count (total) 93
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMEO00000000.1