Rhizobacter sp001425865
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Rhizobacter; s__Rhizobacter sp001425865
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__; g__Rhizobacter; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; x__unclassified Burkholderiales; x__Burkholderiales Genera incertae sedis; g__Rhizobacter; s__Rhizobacter sp. Root404
NCBI Strain Identifiers Root404
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 1.17%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 14
N50 Contigs 1,428,759 bp
Longest Contig 2,127,706 bp
Scaffold Count 11
N50 Scaffolds 1,428,759 bp
Longest Scaffold 2,128,353 bp
Genome Size 5,274,600 bp
Protein Count 4,892
Coding Density 92.44%
GC Percentage 68.64%
Ambiguous Bases 49
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root404
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155797
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001425865.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 4,873
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 3
Species Taxid 1736528
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736528
Total Gap Length 104
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMDS00000000.1