Pelomonas sp001425705
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pelomonas; s__Pelomonas sp001425705
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Pelomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Pelomonas; s__Pelomonas sp. Root1217
NCBI Strain Identifiers Root1217
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 38
N50 Contigs 605,919 bp
Longest Contig 992,256 bp
Scaffold Count 32
N50 Scaffolds 1,140,123 bp
Longest Scaffold 1,598,207 bp
Genome Size 6,649,903 bp
Protein Count 5,947
Coding Density 91.94%
GC Percentage 67.41%
Ambiguous Bases 195
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root1217
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155699
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001425705.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 5,903
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 6
Species Taxid 1736430
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736430
Total Gap Length 399
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMDC00000000.1