Variovorax sp001425205
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Variovorax; s__Variovorax sp001425205
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Variovorax; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Variovorax; s__Variovorax sp. Root411
NCBI Strain Identifiers Root411
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 31
N50 Contigs 544,548 bp
Longest Contig 1,314,394 bp
Scaffold Count 21
N50 Scaffolds 544,548 bp
Longest Scaffold 1,314,394 bp
Genome Size 6,064,537 bp
Protein Count 5,584
Coding Density 91.56%
GC Percentage 66.64%
Ambiguous Bases 91
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root411
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155799
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001425205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 5,572
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 10
Species Taxid 1736530
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736530
Total Gap Length 616
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMDW00000000.1