Pseudoduganella sp001425045
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pseudoduganella; s__Pseudoduganella sp001425045
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Massilia; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Massilia; s__Massilia sp. Root351
NCBI Strain Identifiers Root351
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 1.84%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 37
N50 Contigs 452,524 bp
Longest Contig 1,161,386 bp
Scaffold Count 36
N50 Scaffolds 452,524 bp
Longest Scaffold 1,161,386 bp
Genome Size 7,207,331 bp
Protein Count 6,226
Coding Density 92.19%
GC Percentage 65.82%
Ambiguous Bases 113
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root351
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155791
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001425045.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 6,245
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 1
Species Taxid 1736522
SSU Count 2
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736522
Total Gap Length 19
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMDJ00000000.1