Pseudoduganella sp001425005
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pseudoduganella; s__Pseudoduganella sp001425005
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Duganella; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Duganella; s__Duganella sp. Root336D2
NCBI Strain Identifiers Root336D2
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 0.84%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 40
N50 Contigs 420,096 bp
Longest Contig 1,126,261 bp
Scaffold Count 39
N50 Scaffolds 420,096 bp
Longest Scaffold 1,126,261 bp
Genome Size 6,579,467 bp
Protein Count 5,922
Coding Density 92.40%
GC Percentage 62.32%
Ambiguous Bases 217
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root336D2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155787
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001425005.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 5,928
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 1
Species Taxid 1736518
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736518
Total Gap Length 59
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMDB00000000.1