Rhizobium sp001424945
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__Rhizobium sp001424945
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Rhizobium; s__Rhizobium sp. Root1203
NCBI Strain Identifiers Root1203
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 0.99%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 70
N50 Contigs 206,116 bp
Longest Contig 1,142,022 bp
Scaffold Count 69
N50 Scaffolds 206,116 bp
Longest Scaffold 1,142,022 bp
Genome Size 6,705,461 bp
Protein Count 6,579
Coding Density 86.95%
GC Percentage 60.07%
Ambiguous Bases 283
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root1203
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155696
Country Germany:Cologne
Date 2015-11-2
Genbank Assembly Accession GCA_001424945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.958 N 6.856 E
Molecule Count N/A
CDS Count 6,579
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 1
Species Taxid 1736427
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736427
Total Gap Length 17
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMCW00000000.1