Variovorax sp001424835
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Variovorax; s__Variovorax sp001424835
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Variovorax; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Variovorax; s__Variovorax sp. Root318D1
NCBI Strain Identifiers Root318D1
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.93%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 30
N50 Contigs 341,907 bp
Longest Contig 568,240 bp
Scaffold Count 25
N50 Scaffolds 370,305 bp
Longest Scaffold 769,994 bp
Genome Size 5,745,828 bp
Protein Count 5,351
Coding Density 92.40%
GC Percentage 65.80%
Ambiguous Bases 141
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Root318D1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04155782
Country Germany:Widdersdorf
Date 2015-11-2
Genbank Assembly Accession GCA_001424835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source root
Latitude Longitude 50.982 N 6.827 E
Molecule Count N/A
CDS Count 5,365
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 5
Species Taxid 1736513
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736513
Total Gap Length 157
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMCQ00000000.1