Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Massilia; s__Massilia sp001424165
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Massilia; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Oxalobacteraceae; g__Massilia; s__Massilia sp. Leaf139
NCBI Strain Identifiers Leaf139
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.8%
CheckM Contamination 1.05%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 28
N50 Contigs 605,961 bp
Longest Contig 1,464,188 bp
Scaffold Count 28
N50 Scaffolds 605,961 bp
Longest Scaffold 1,464,188 bp
Genome Size 5,387,355 bp
Protein Count 4,704
Coding Density 89.30%
GC Percentage 65.31%
Ambiguous Bases 104
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name Leaf139
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04151652
Country Switzerland:Zurich
Date 2015-11-2
Genbank Assembly Accession GCA_001424165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude 47.4816806 N 8.217547222 E
Molecule Count N/A
CDS Count 4,664
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 0
Species Taxid 1736272
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736272
Total Gap Length 0
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMOJ00000000.1