Pararhizobium sp001424045
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Pararhizobium; s__Pararhizobium sp001424045
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Rhizobium; s__Rhizobium sp. Leaf371
NCBI Strain Identifiers Leaf371
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.77%
CheckM Contamination 0.96%
CheckM Strain Heterogeneity 20.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 31
N50 Contigs 471,107 bp
Longest Contig 1,067,635 bp
Scaffold Count 29
N50 Scaffolds 471,107 bp
Longest Scaffold 1,067,635 bp
Genome Size 5,085,900 bp
Protein Count 4,623
Coding Density 87.37%
GC Percentage 63.58%
Ambiguous Bases 132
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Leaf371
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04151745
Country Switzerland:Zurich
Date 2015-11-2
Genbank Assembly Accession GCA_001424045.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude 47.4816806 N 8.217547222 E
Molecule Count N/A
CDS Count 4,589
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 2
Species Taxid 1736355
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736355
Total Gap Length 82
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMQB00000000.1