Microbacterium ginsengisoli
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Microbacteriaceae; g__Microbacterium; s__Microbacterium ginsengisoli
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Microbacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Microbacterium; s__Microbacterium sp. Leaf351
NCBI Strain Identifiers Leaf351
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000956535.1)
Genome Characteristics
CheckM Completeness 93.09%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 707
N50 Contigs 7,284 bp
Longest Contig 34,541 bp
Scaffold Count 38
N50 Scaffolds 179,324 bp
Longest Scaffold 364,138 bp
Genome Size 2,888,800 bp
Protein Count 2,918
Coding Density 88.73%
GC Percentage 70.36%
Ambiguous Bases 872
GTDB representative GCA_000956535.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Leaf351
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04151738
Country Switzerland:Zurich
Date 2015-11-2
Genbank Assembly Accession GCA_001423825.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude 47.4816806 N 8.217547222 E
Molecule Count N/A
CDS Count 2,794
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 669
Species Taxid 1736348
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736348
Total Gap Length 24563
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMPK00000000.1