Sphingomonas sp001421765
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas sp001421765
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas sp. Leaf29
NCBI Strain Identifiers Leaf29
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001421765.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 16
N50 Contigs 371,705 bp
Longest Contig 606,684 bp
Scaffold Count 15
N50 Scaffolds 371,705 bp
Longest Scaffold 618,128 bp
Genome Size 3,945,508 bp
Protein Count 3,611
Coding Density 90.26%
GC Percentage 66.90%
Ambiguous Bases 21
GTDB representative GCA_001421765.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Leaf29
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04151592
Country Switzerland:Zurich
Date 2015-11-2
Genbank Assembly Accession GCA_001422495.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude 47.4816806 N 8.217547222 E
Molecule Count N/A
CDS Count 3,563
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 1
Species Taxid 1736212
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736212
Total Gap Length 11
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMKY00000000.1