Pseudomonas_E sp001421885
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E sp001421885
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. Leaf48
NCBI Strain Identifiers Leaf48
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 34
N50 Contigs 306,370 bp
Longest Contig 682,013 bp
Scaffold Count 33
N50 Scaffolds 306,370 bp
Longest Scaffold 803,113 bp
Genome Size 5,689,447 bp
Protein Count 5,176
Coding Density 87.49%
GC Percentage 59.44%
Ambiguous Bases 242
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Leaf48
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04151601
Country Switzerland:Zurich
Date 2015-11-2
Genbank Assembly Accession GCA_001421885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude 47.4816806 N 8.217547222 E
Molecule Count N/A
CDS Count 5,155
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 1
Species Taxid 1736221
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736221
Total Gap Length 42
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMLH00000000.1