Sphingomonas sp001421765
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas sp001421765
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas sp. Leaf32
NCBI Strain Identifiers Leaf32
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 14
N50 Contigs 377,269 bp
Longest Contig 1,131,958 bp
Scaffold Count 14
N50 Scaffolds 377,269 bp
Longest Scaffold 1,131,958 bp
Genome Size 3,946,283 bp
Protein Count 3,612
Coding Density 90.28%
GC Percentage 66.90%
Ambiguous Bases 12
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name Leaf32
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04151594
Country Switzerland:Zurich
Date 2015-11-2
Genbank Assembly Accession GCA_001421765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude 47.4816806 N 8.217547222 E
Molecule Count N/A
CDS Count 3,564
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 0
Species Taxid 1736214
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1736214
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMLA00000000.1