Xylophilus sp001421705
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Xylophilus; s__Xylophilus sp001421705
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__; g__Xylophilus; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; x__unclassified Burkholderiales; x__Burkholderiales Genera incertae sedis; g__Xylophilus; s__Xylophilus sp. Leaf220
NCBI Strain Identifiers Leaf220
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.53%
CheckM Contamination 0.58%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 29
N50 Contigs 375,388 bp
Longest Contig 1,086,378 bp
Scaffold Count 28
N50 Scaffolds 375,388 bp
Longest Scaffold 1,086,378 bp
Genome Size 4,483,623 bp
Protein Count 3,982
Coding Density 89.82%
GC Percentage 69.43%
Ambiguous Bases 67
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Leaf220
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04151686
Country Switzerland:Zurich
Date 2015-11-2
Genbank Assembly Accession GCA_001421705.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude 47.4816806 N 8.217547222 E
Molecule Count N/A
CDS Count 3,968
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 1
Species Taxid 1735686
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1735686
Total Gap Length 40
Translation Table 11
tRNA Count (total) 38
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMKO00000000.1