Sphingobium sp001421665
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingobium; s__Sphingobium sp001421665
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingobium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingobium; s__Sphingobium sp. Leaf26
NCBI Strain Identifiers Leaf26
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 1.65%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 33
N50 Contigs 350,591 bp
Longest Contig 964,049 bp
Scaffold Count 33
N50 Scaffolds 350,591 bp
Longest Scaffold 964,049 bp
Genome Size 4,822,147 bp
Protein Count 4,446
Coding Density 89.60%
GC Percentage 63.49%
Ambiguous Bases 78
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM142166v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04151590
Country Switzerland:Zurich
Date 2015-11-2
Genbank Assembly Accession GCA_001421665.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude 47.4816806 N 8.217547222 E
Molecule Count N/A
CDS Count 4,413
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 0
Species Taxid 1735693
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1735693
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMKV00000000.1