Sphingomonas sp001421415
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas sp001421415
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas sp. Leaf208
NCBI Strain Identifiers Leaf208
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 2.14%
CheckM Strain Heterogeneity 7.14
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 40
N50 Contigs 498,466 bp
Longest Contig 606,286 bp
Scaffold Count 39
N50 Scaffolds 533,238 bp
Longest Scaffold 832,529 bp
Genome Size 4,703,275 bp
Protein Count 4,262
Coding Density 87.04%
GC Percentage 64.40%
Ambiguous Bases 119
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Leaf208
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04151683
Country Germany:Tubingen
Date 2015-11-2
Genbank Assembly Accession GCA_001421415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude 48.5560194 N 9.134944444 E
Molecule Count N/A
CDS Count 4,189
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 1
Species Taxid 1735679
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1735679
Total Gap Length 23
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMKH00000000.1