Frigoribacterium sp001421165
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Microbacteriaceae; g__Frigoribacterium; s__Frigoribacterium sp001421165
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Frigoribacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Frigoribacterium; s__Frigoribacterium sp. Leaf8
NCBI Strain Identifiers Leaf8
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.4%
CheckM Contamination 0.34%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 65
N50 Contigs 137,374 bp
Longest Contig 403,535 bp
Scaffold Count 12
N50 Scaffolds 839,735 bp
Longest Scaffold 1,464,855 bp
Genome Size 3,328,572 bp
Protein Count 3,062
Coding Density 89.68%
GC Percentage 71.31%
Ambiguous Bases 64
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Leaf8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04151577
Country Switzerland:Zurich
Date 2015-11-2
Genbank Assembly Accession GCA_001421165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf
Latitude Longitude 47.4227222 N 8.548666667 E
Molecule Count N/A
CDS Count 3,048
Refseq Category na
Seq Rel Date 2015/11/02
Spanned Gaps 53
Species Taxid 1735673
SSU Count 1
Submitter Max Planck Institute for Plant Breeding Research
Taxid 1735673
Total Gap Length 2478
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMKB00000000.1