Apilactobacillus kunkeei_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Apilactobacillus; s__Apilactobacillus kunkeei_A
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kunkeei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kunkeei
NCBI Strain Identifiers LAfl
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001949975.1)
Genome Characteristics
CheckM Completeness 97.76%
CheckM Contamination 0.94%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 14
N50 Contigs 198,823 bp
Longest Contig 271,997 bp
Scaffold Count 14
N50 Scaffolds 198,823 bp
Longest Scaffold 271,997 bp
Genome Size 1,567,135 bp
Protein Count 1,443
Coding Density 90.35%
GC Percentage 36.98%
Ambiguous Bases N/A
GTDB representative GCA_001949975.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM142113v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03275715
Country Thailand
Date 2015-9-11
Genbank Assembly Accession GCA_001421135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 1,445
Refseq Category na
Seq Rel Date 2015/09/11
Spanned Gaps 0
Species Taxid 148814
SSU Count 2
Submitter Uppsala university
Taxid 148814
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JXCX00000000.1