Apilactobacillus kunkeei_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Apilactobacillus; s__Apilactobacillus kunkeei_A
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kunkeei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kunkeei
NCBI Strain Identifiers LAce
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001949975.1)
Genome Characteristics
CheckM Completeness 97.76%
CheckM Contamination 0.94%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 8
N50 Contigs 317,931 bp
Longest Contig 366,741 bp
Scaffold Count 8
N50 Scaffolds 317,931 bp
Longest Scaffold 366,741 bp
Genome Size 1,525,855 bp
Protein Count 1,373
Coding Density 90.30%
GC Percentage 37.18%
Ambiguous Bases N/A
GTDB representative GCA_001949975.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM142111v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03275714
Country Malaysia: Borneo
Date 2015-9-11
Genbank Assembly Accession GCA_001421115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 2
CDS Count 1,380
Refseq Category na
Seq Rel Date 2015/09/11
Spanned Gaps 0
Species Taxid 148814
SSU Count 2
Submitter Uppsala university
Taxid 148814
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JXCW00000000.1