Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers SLPE
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.56%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 15
Contig Count 153
N50 Contigs 109,308 bp
Longest Contig 289,742 bp
Scaffold Count 152
N50 Scaffolds 109,308 bp
Longest Scaffold 289,742 bp
Genome Size 4,909,646 bp
Protein Count 4,683
Coding Density 88.26%
GC Percentage 50.60%
Ambiguous Bases 412
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM142104v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04002438
Country China: Changchun
Date 2015-10-30
Genbank Assembly Accession GCA_001421045.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source lung
Latitude Longitude 43.88 N 125.35 E
Molecule Count N/A
CDS Count 5,039
Refseq Category na
Seq Rel Date 2015/10/30
Spanned Gaps 1
Species Taxid 562
SSU Count 1
Submitter Jilin Agricultural University
Taxid 562
Total Gap Length 12
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJCG00000000.1