Helicobacter pylori_C
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
NCBI Strain Identifiers UM229S
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000277405.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 25
N50 Contigs 88,714 bp
Longest Contig 305,436 bp
Scaffold Count 24
N50 Scaffolds 98,296 bp
Longest Scaffold 305,436 bp
Genome Size 1,542,483 bp
Protein Count 1,488
Coding Density 91.22%
GC Percentage 38.91%
Ambiguous Bases N/A
GTDB representative GCA_000277405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM142042v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04046444
Country Malaysia
Date 2016-12-13
Genbank Assembly Accession GCA_001420425.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Gastric biopsy
Latitude Longitude None
Molecule Count N/A
CDS Count 1,502
Refseq Category na
Seq Rel Date 2016/12/13
Spanned Gaps 1
Species Taxid 210
SSU Count 1
Submitter University of Malaya - University of Western Australia
Taxid 210
Total Gap Length 131
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJNZ00000000.2