Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 146
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 171
N50 Contigs 152,463 bp
Longest Contig 298,034 bp
Scaffold Count 171
N50 Scaffolds 152,463 bp
Longest Scaffold 298,034 bp
Genome Size 5,154,778 bp
Protein Count 4,978
Coding Density 88.05%
GC Percentage 50.60%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM141986v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04009854
Country Tanzania
Date 2015-10-29
Genbank Assembly Accession GCA_001419865.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,399
Refseq Category na
Seq Rel Date 2015/10/29
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter University of Copenhagen
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIUZ00000000.1