Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 116
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.1%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 95
N50 Contigs 181,155 bp
Longest Contig 435,922 bp
Scaffold Count 95
N50 Scaffolds 181,155 bp
Longest Scaffold 435,922 bp
Genome Size 4,793,622 bp
Protein Count 4,515
Coding Density 88.39%
GC Percentage 50.60%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM141982v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04009848
Country Tanzania
Date 2015-10-29
Genbank Assembly Accession GCA_001419825.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,873
Refseq Category na
Seq Rel Date 2015/10/29
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter University of Copenhagen
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIUX00000000.1