Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli; x__Campylobacter coli CVM 41970
NCBI Strain Identifiers CVM 41970
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 97.8%
CheckM Contamination 1.44%
CheckM Strain Heterogeneity 73.33
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 180
N50 Contigs 96,058 bp
Longest Contig 219,081 bp
Scaffold Count 180
N50 Scaffolds 96,058 bp
Longest Scaffold 219,081 bp
Genome Size 1,798,122 bp
Protein Count 1,985
Coding Density 93.07%
GC Percentage 31.17%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Campylobacter coli CVM 41970 v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02887110
Country USA
Date 2015-10-29
Genbank Assembly Accession GCA_001419445.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical
Latitude Longitude None
Molecule Count N/A
CDS Count 1,916
Refseq Category na
Seq Rel Date 2015/10/29
Spanned Gaps 0
Species Taxid 195
SSU Count 1
Submitter FDA/CVM
Taxid 1323654
Total Gap Length 0
Translation Table 11
tRNA Count (total) 41
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JAJH00000000.1